Image Analysis - ZMB UZH

v7.0

01/09/2025 by z mbstaff

Printed Copies Are Uncontrolled

Wiki ID: 21

Author: z mbstaff

Release: v7.0 [Major]

Revision ID: 919

Revision Date: 01-09-25

Author: Dominik Hänni (and 4 other contributors)

How-to Guides

Counting nuclei with MetaXpress

Counting nuclei with MetaXpress

Export Leica Falcon LAS X FLIM Image Data

Export Leica Falcon LAS X FLIM Image Data

Leica LAS X Navigator - Merge regular and irregular shapes

Leica LAS X Navigator - Merge regular and irregular shapes

Leica LASX Auto-Save and How to Handle the Resulting Files

Leica LASX Auto-Save and How to Handle the Resulting Files

MesoSPIM Stitching using BigStitcher

MesoSPIM Stitching using BigStitcher

Slidescanner - Zeiss Z1 - PartOptionalA: Export .czi Files to .tif

Slidescanner - Zeiss Z1 - PartOptionalA: Export .czi Files to .tif

Slidescanner - Zeiss Z1 - PartOptionalB: Visualize Slide Data Using QuPath

Slidescanner - Zeiss Z1 - PartOptionalB: Visualize Slide Data Using QuPath

Thermo Fisher MAPS viewer for electron microscopy data

Thermo Fisher MAPS viewer for electron microscopy data

Support Questions

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MesoSPIM Stitching using BigStitcher

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Video Tutorial: 3D reconstruction from serial sections using TrackEM2 - by Moritz Kirschmann.

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Image Deconvolution using SVI Huygens

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Ilastik Pixel Classification and Segmentation

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Ilastik Pixel Classification: Batch Processing of Multiple Files

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Imaris Part 1: File conversion and opening files

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Imaris Part 1: File Import using Arena

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Imaris Part 2: 3D Visualization

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Imaris Part 3: Segmentation and Surfaces

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Imaris Part 4: Object Classification

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Leica LAS X Navigator - Merge regular and irregular shapes

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Convert Images to OME formats

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Slidescanner - Zeiss Z1 - PartOptionalB: Visualize Slide Data Using QuPath

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Thermo Fisher MAPS viewer for electron microscopy data

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