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Open the Excel template, that is attached to this guide. (Scroll down to the end of the guide to see attached files)
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Sheet with explanation
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Actual template for the Slidescanner
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Headers of the columns that you have in the template.
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Example how the template should look, if there is a name and profile assigned.
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In this example only the first two slides of tray 1 are defined.
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The scan profile has to have the exact same name as in ZEN and they have to be available in your own scan profile folder on the slidescanner.
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With your naming sheet active, go to "save as" in Excel.
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Choose a storage location (preferably your home drive, as you will have access from the Slidescanner); Define a name.
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Choose CSV as the saving format.
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Accept the warning, that it will only save the current active sheet.
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Open the file in an editor and check, if Excel chooses Semicolon or coma as a separator (This depends on your Region settings in Windows).
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Go to the Slidescanner, that you booked.
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Follow the Startup Guide: Slidescanner - Zeiss Z1 - Part1: Start Up
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Load your slides in the exact same order, as you wrote your naming list.
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The trays have small numbers from 1 to 4 on it.
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This step is only needed, when you use the profile for the first time.
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Make sure your scan profiles, that you assigned in the csv file are in this location on the slidescanner.
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You can copy "C:\Users\%username%\Documents\Carl Zeiss\ZEN\Documents\Scan Profiles" into the Windows file explorer to get to the location
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These are the profiles from the example in the Excel sheet.
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This step is also only needed the first time ZEN is set up with a csv file.
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Go to "Tools" -> "Options"
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Go to " Acquisition" -> "Axio Scan"
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Choose "Semicolon" as "Delimiter for csv import"
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Click on "Import Name,..." in the "Naming definition" tab of ZEN.
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Choose your csv file.
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ZEN gives you a feedback about the import of the settings. It skips the positions, where no slide is present.
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Check if your scan profiles and names were assigned correctly.
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Positions that are not further defined in the Excel sheet / csv are scanned with default settings. before clicking on "Scan" the slides you did not further define should be excluded by unmarking.
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Choose "X:\ " as the storage location.
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Make a new folder and rename it with the experiment number from the Filemaker.
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Cick on "Start Scan"
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Let the machine run.
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Once the acquisition is finished, make sure all the trays are unloaded.
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Then open the Slidescanner door and remove all your slides again. Then close the door, close the ZEN software and sign out your account from the computer.
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Go to Citrix and login with your core account.
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Click on the "CORE Datamover"
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Choose the "Slidescanner"
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Type in the project number of your acquisition
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Click on "Request" to start the data transfer.
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You will get an Email, when the data transer is finished.
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Almost done!
Finish Line